Combined use of bulked segregant analysis and microarrays reveals SNP markers pinpointing a major QTL for resistance to Phytophthora capsici in pepper.
Identifieur interne : 001137 ( Main/Exploration ); précédent : 001136; suivant : 001138Combined use of bulked segregant analysis and microarrays reveals SNP markers pinpointing a major QTL for resistance to Phytophthora capsici in pepper.
Auteurs : Wing-Yee Liu [Corée du Sud] ; Jin-Ho Kang ; Hyeon-Seok Jeong ; Hye-Jeong Choi ; Hee-Bum Yang ; Ki-Taek Kim ; Doil Choi ; Gyung Ja Choi ; Molly Jahn ; Byoung-Cheorl KangSource :
- TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [ 1432-2242 ] ; 2014.
Descripteurs français
- KwdFr :
- ADN des plantes (génétique), Analyse de séquence d'ADN (MeSH), Capsicum (génétique), Capsicum (microbiologie), Cartographie chromosomique (MeSH), Chromosomes de plante (MeSH), Données de séquences moléculaires (MeSH), Liaison génétique (MeSH), Locus de caractère quantitatif (MeSH), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Marqueurs génétiques (MeSH), Modèles génétiques (MeSH), Phytophthora (MeSH), Phénotype (MeSH), Polymorphisme de nucléotide simple (MeSH), Résistance à la maladie (génétique), Séquence nucléotidique (MeSH), Séquençage par oligonucléotides en batterie (MeSH).
- MESH :
- génétique : ADN des plantes, Capsicum, Maladies des plantes, Résistance à la maladie.
- microbiologie : Capsicum, Maladies des plantes.
- Analyse de séquence d'ADN, Cartographie chromosomique, Chromosomes de plante, Données de séquences moléculaires, Liaison génétique, Locus de caractère quantitatif, Marqueurs génétiques, Modèles génétiques, Phytophthora, Phénotype, Polymorphisme de nucléotide simple, Séquence nucléotidique, Séquençage par oligonucléotides en batterie.
English descriptors
- KwdEn :
- Base Sequence (MeSH), Capsicum (genetics), Capsicum (microbiology), Chromosome Mapping (MeSH), Chromosomes, Plant (MeSH), DNA, Plant (genetics), Disease Resistance (genetics), Genetic Linkage (MeSH), Genetic Markers (MeSH), Models, Genetic (MeSH), Molecular Sequence Data (MeSH), Oligonucleotide Array Sequence Analysis (MeSH), Phenotype (MeSH), Phytophthora (MeSH), Plant Diseases (genetics), Plant Diseases (microbiology), Polymorphism, Single Nucleotide (MeSH), Quantitative Trait Loci (MeSH), Sequence Analysis, DNA (MeSH).
- MESH :
- chemical , genetics : DNA, Plant.
- genetics : Capsicum, Disease Resistance, Plant Diseases.
- microbiology : Capsicum, Plant Diseases.
- Base Sequence, Chromosome Mapping, Chromosomes, Plant, Genetic Linkage, Genetic Markers, Models, Genetic, Molecular Sequence Data, Oligonucleotide Array Sequence Analysis, Phenotype, Phytophthora, Polymorphism, Single Nucleotide, Quantitative Trait Loci, Sequence Analysis, DNA.
Abstract
KEY MESSAGE
Bulked segregant analysis (BSA) using Affymetrix GeneChips revealed candidate genes underlying the major QTL for Phytophthora capsici resistance in Capsicum. Using the candidate genes, reliable markers for Phytophthora resistance were developed and validated. Phytophthora capsici L. is one of the most destructive pathogens of pepper (Capsicum spp.). Resistance of pepper against P. capsici is controlled by quantitative trait loci (QTL), including a major QTL on chromosome 5 that is the predominant contributor to resistance. Here, to maximize the effect of this QTL and study its underlying genes, an F2 population and recombinant inbred lines were inoculated with P. capsici strain JHAI1-7 zoospores at a low concentration (3 × 10(3)/mL). Resistance phenotype segregation ratios for the populations fit a 3:1 and 1:1 (resistant:susceptible) segregation model, respectively, consistent with a single dominant gene model. Bulked segregant analysis (BSA) using Affymetrix GeneChips revealed a single position polymorphism (SPP) marker mapping to the major QTL. When this SPP marker (Phyto5SAR) together with other SNP markers located on chromosome 5 was used to confirm the position of the major QTL, Phyto5SAR showed the highest LOD value at the QTL. A scaffold sequence (scaffold194) containing Phyto5SAR was identified from the C. annuum genome database. The scaffold contained two putative NBS-LRR genes and one SAR 8.2A gene as candidates for contributing to P. capsici resistance. Markers linked to these genes were developed and validated by testing 100 F1 commercial cultivars. Among the markers, Phyto5NBS1 showed about 90% accuracy in predicting resistance phenotypes to a low-virulence P. capsici isolate. These results suggest that Phyto5NBS1 is a reliable marker for P. capsici resistance and can be used for identification of a gene(s) underlying the major QTL on chromosome 5.
DOI: 10.1007/s00122-014-2394-8
PubMed: 25208646
Affiliations:
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segregant analysis and microarrays reveals SNP markers pinpointing a major QTL for resistance to Phytophthora capsici in pepper.</title><author><name sortKey="Liu, Wing Yee" sort="Liu, Wing Yee" uniqKey="Liu W" first="Wing-Yee" last="Liu">Wing-Yee Liu</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Science, Plant Genomics and Breeding Institute and Research Institute for Agriculture and Life Sciences, Seoul National University, 1 Gwanak-ro Gwank-gu, 151-921, Seoul, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Plant Science, Plant Genomics and Breeding Institute and Research Institute for Agriculture and Life Sciences, Seoul National University, 1 Gwanak-ro Gwank-gu, 151-921, Seoul</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName></affiliation></author><author><name sortKey="Kang, Jin Ho" sort="Kang, Jin Ho" uniqKey="Kang J" first="Jin-Ho" last="Kang">Jin-Ho Kang</name></author><author><name sortKey="Jeong, Hyeon Seok" sort="Jeong, Hyeon Seok" uniqKey="Jeong H" first="Hyeon-Seok" last="Jeong">Hyeon-Seok Jeong</name></author><author><name sortKey="Choi, Hye Jeong" sort="Choi, Hye Jeong" uniqKey="Choi H" first="Hye-Jeong" last="Choi">Hye-Jeong Choi</name></author><author><name sortKey="Yang, Hee Bum" sort="Yang, Hee Bum" uniqKey="Yang H" first="Hee-Bum" last="Yang">Hee-Bum Yang</name></author><author><name sortKey="Kim, Ki Taek" sort="Kim, Ki Taek" uniqKey="Kim K" first="Ki-Taek" last="Kim">Ki-Taek Kim</name></author><author><name sortKey="Choi, Doil" sort="Choi, Doil" uniqKey="Choi D" first="Doil" last="Choi">Doil Choi</name></author><author><name sortKey="Choi, Gyung Ja" sort="Choi, Gyung Ja" uniqKey="Choi G" first="Gyung Ja" last="Choi">Gyung Ja Choi</name></author><author><name sortKey="Jahn, Molly" sort="Jahn, Molly" uniqKey="Jahn M" first="Molly" last="Jahn">Molly Jahn</name></author><author><name sortKey="Kang, Byoung Cheorl" sort="Kang, Byoung Cheorl" uniqKey="Kang B" first="Byoung-Cheorl" last="Kang">Byoung-Cheorl Kang</name></author></analytic><series><title level="j">TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</title><idno type="eISSN">1432-2242</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence (MeSH)</term><term>Capsicum (genetics)</term><term>Capsicum (microbiology)</term><term>Chromosome Mapping (MeSH)</term><term>Chromosomes, Plant (MeSH)</term><term>DNA, Plant (genetics)</term><term>Disease Resistance (genetics)</term><term>Genetic Linkage (MeSH)</term><term>Genetic Markers (MeSH)</term><term>Models, Genetic (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Oligonucleotide Array Sequence Analysis (MeSH)</term><term>Phenotype (MeSH)</term><term>Phytophthora (MeSH)</term><term>Plant Diseases (genetics)</term><term>Plant Diseases (microbiology)</term><term>Polymorphism, Single Nucleotide (MeSH)</term><term>Quantitative Trait Loci (MeSH)</term><term>Sequence Analysis, DNA (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN des plantes (génétique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Capsicum (génétique)</term><term>Capsicum (microbiologie)</term><term>Cartographie chromosomique (MeSH)</term><term>Chromosomes de plante (MeSH)</term><term>Données de séquences moléculaires (MeSH)</term><term>Liaison génétique (MeSH)</term><term>Locus de caractère quantitatif (MeSH)</term><term>Maladies des plantes (génétique)</term><term>Maladies des plantes (microbiologie)</term><term>Marqueurs génétiques (MeSH)</term><term>Modèles génétiques (MeSH)</term><term>Phytophthora (MeSH)</term><term>Phénotype (MeSH)</term><term>Polymorphisme de nucléotide simple (MeSH)</term><term>Résistance à la maladie (génétique)</term><term>Séquence nucléotidique (MeSH)</term><term>Séquençage par oligonucléotides en batterie (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Plant</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Capsicum</term><term>Disease Resistance</term><term>Plant Diseases</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN des plantes</term><term>Capsicum</term><term>Maladies des plantes</term><term>Résistance à la maladie</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Capsicum</term><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Capsicum</term><term>Plant Diseases</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Chromosome Mapping</term><term>Chromosomes, Plant</term><term>Genetic Linkage</term><term>Genetic Markers</term><term>Models, Genetic</term><term>Molecular Sequence Data</term><term>Oligonucleotide Array Sequence Analysis</term><term>Phenotype</term><term>Phytophthora</term><term>Polymorphism, Single Nucleotide</term><term>Quantitative Trait Loci</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Cartographie chromosomique</term><term>Chromosomes de plante</term><term>Données de séquences moléculaires</term><term>Liaison génétique</term><term>Locus de caractère quantitatif</term><term>Marqueurs génétiques</term><term>Modèles génétiques</term><term>Phytophthora</term><term>Phénotype</term><term>Polymorphisme de nucléotide simple</term><term>Séquence nucléotidique</term><term>Séquençage par oligonucléotides en batterie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>KEY MESSAGE</b></p><p>Bulked segregant analysis (BSA) using Affymetrix GeneChips revealed candidate genes underlying the major QTL for Phytophthora capsici resistance in Capsicum. Using the candidate genes, reliable markers for Phytophthora resistance were developed and validated. Phytophthora capsici L. is one of the most destructive pathogens of pepper (Capsicum spp.). Resistance of pepper against P. capsici is controlled by quantitative trait loci (QTL), including a major QTL on chromosome 5 that is the predominant contributor to resistance. Here, to maximize the effect of this QTL and study its underlying genes, an F2 population and recombinant inbred lines were inoculated with P. capsici strain JHAI1-7 zoospores at a low concentration (3 × 10(3)/mL). Resistance phenotype segregation ratios for the populations fit a 3:1 and 1:1 (resistant:susceptible) segregation model, respectively, consistent with a single dominant gene model. Bulked segregant analysis (BSA) using Affymetrix GeneChips revealed a single position polymorphism (SPP) marker mapping to the major QTL. When this SPP marker (Phyto5SAR) together with other SNP markers located on chromosome 5 was used to confirm the position of the major QTL, Phyto5SAR showed the highest LOD value at the QTL. A scaffold sequence (scaffold194) containing Phyto5SAR was identified from the C. annuum genome database. The scaffold contained two putative NBS-LRR genes and one SAR 8.2A gene as candidates for contributing to P. capsici resistance. Markers linked to these genes were developed and validated by testing 100 F1 commercial cultivars. Among the markers, Phyto5NBS1 showed about 90% accuracy in predicting resistance phenotypes to a low-virulence P. capsici isolate. These results suggest that Phyto5NBS1 is a reliable marker for P. capsici resistance and can be used for identification of a gene(s) underlying the major QTL on chromosome 5.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25208646</PMID><DateCompleted><Year>2015</Year><Month>05</Month><Day>15</Day></DateCompleted><DateRevised><Year>2020</Year><Month>05</Month><Day>16</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-2242</ISSN><JournalIssue CitedMedium="Internet"><Volume>127</Volume><Issue>11</Issue><PubDate><Year>2014</Year><Month>Nov</Month></PubDate></JournalIssue><Title>TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</Title><ISOAbbreviation>Theor Appl Genet</ISOAbbreviation></Journal><ArticleTitle>Combined use of bulked segregant analysis and microarrays reveals SNP markers pinpointing a major QTL for resistance to Phytophthora capsici in pepper.</ArticleTitle><Pagination><MedlinePgn>2503-13</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00122-014-2394-8</ELocationID><Abstract><AbstractText Label="KEY MESSAGE" NlmCategory="CONCLUSIONS">Bulked segregant analysis (BSA) using Affymetrix GeneChips revealed candidate genes underlying the major QTL for Phytophthora capsici resistance in Capsicum. Using the candidate genes, reliable markers for Phytophthora resistance were developed and validated. Phytophthora capsici L. is one of the most destructive pathogens of pepper (Capsicum spp.). Resistance of pepper against P. capsici is controlled by quantitative trait loci (QTL), including a major QTL on chromosome 5 that is the predominant contributor to resistance. Here, to maximize the effect of this QTL and study its underlying genes, an F2 population and recombinant inbred lines were inoculated with P. capsici strain JHAI1-7 zoospores at a low concentration (3 × 10(3)/mL). Resistance phenotype segregation ratios for the populations fit a 3:1 and 1:1 (resistant:susceptible) segregation model, respectively, consistent with a single dominant gene model. Bulked segregant analysis (BSA) using Affymetrix GeneChips revealed a single position polymorphism (SPP) marker mapping to the major QTL. When this SPP marker (Phyto5SAR) together with other SNP markers located on chromosome 5 was used to confirm the position of the major QTL, Phyto5SAR showed the highest LOD value at the QTL. A scaffold sequence (scaffold194) containing Phyto5SAR was identified from the C. annuum genome database. The scaffold contained two putative NBS-LRR genes and one SAR 8.2A gene as candidates for contributing to P. capsici resistance. Markers linked to these genes were developed and validated by testing 100 F1 commercial cultivars. Among the markers, Phyto5NBS1 showed about 90% accuracy in predicting resistance phenotypes to a low-virulence P. capsici isolate. These results suggest that Phyto5NBS1 is a reliable marker for P. capsici resistance and can be used for identification of a gene(s) underlying the major QTL on chromosome 5.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Wing-Yee</ForeName><Initials>WY</Initials><AffiliationInfo><Affiliation>Department of Plant Science, Plant Genomics and Breeding Institute and Research Institute for Agriculture and Life Sciences, Seoul National University, 1 Gwanak-ro Gwank-gu, 151-921, Seoul, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kang</LastName><ForeName>Jin-Ho</ForeName><Initials>JH</Initials></Author><Author ValidYN="Y"><LastName>Jeong</LastName><ForeName>Hyeon-Seok</ForeName><Initials>HS</Initials></Author><Author ValidYN="Y"><LastName>Choi</LastName><ForeName>Hye-Jeong</ForeName><Initials>HJ</Initials></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Hee-Bum</ForeName><Initials>HB</Initials></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Ki-Taek</ForeName><Initials>KT</Initials></Author><Author ValidYN="Y"><LastName>Choi</LastName><ForeName>Doil</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Choi</LastName><ForeName>Gyung Ja</ForeName><Initials>GJ</Initials></Author><Author ValidYN="Y"><LastName>Jahn</LastName><ForeName>Molly</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Kang</LastName><ForeName>Byoung-Cheorl</ForeName><Initials>BC</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>09</Month><Day>11</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Theor Appl Genet</MedlineTA><NlmUniqueID>0145600</NlmUniqueID><ISSNLinking>0040-5752</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018744">DNA, Plant</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002212" MajorTopicYN="N">Capsicum</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018744" MajorTopicYN="N">DNA, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008040" MajorTopicYN="N">Genetic Linkage</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008957" MajorTopicYN="N">Models, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020411" MajorTopicYN="N">Oligonucleotide Array Sequence Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="Y">Phytophthora</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020641" MajorTopicYN="Y">Polymorphism, Single Nucleotide</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D040641" MajorTopicYN="Y">Quantitative Trait Loci</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>06</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2014</Year><Month>08</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>9</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2014</Year><Month>9</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2015</Year><Month>5</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">25208646</ArticleId><ArticleId IdType="doi">10.1007/s00122-014-2394-8</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>BMC Genomics. 2010 Mar 08;11:158</Citation><ArticleIdList><ArticleId IdType="pubmed">20210995</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1999 Jul;152(3):1183-202</Citation><ArticleIdList><ArticleId IdType="pubmed">10388833</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2003 Dec;36(6):867-82</Citation><ArticleIdList><ArticleId IdType="pubmed">14675451</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2006 Feb;112(4):744-51</Citation><ArticleIdList><ArticleId IdType="pubmed">16395567</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2003 Mar;13(3):513-23</Citation><ArticleIdList><ArticleId IdType="pubmed">12618383</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2002 Dec;32(5):655-67</Citation><ArticleIdList><ArticleId IdType="pubmed">12472683</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2003 Apr;15(4):809-34</Citation><ArticleIdList><ArticleId IdType="pubmed">12671079</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2007 Jul;115(2):253-64</Citation><ArticleIdList><ArticleId IdType="pubmed">17497121</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 2000 Jun;155(2):873-87</Citation><ArticleIdList><ArticleId IdType="pubmed">10835406</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2005 Apr 15;21(8):1703-4</Citation><ArticleIdList><ArticleId IdType="pubmed">15598829</ArticleId></ArticleIdList></Reference><Reference><Citation>Planta. 2003 Jan;216(3):387-96</Citation><ArticleIdList><ArticleId IdType="pubmed">12520329</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9128-33</Citation><ArticleIdList><ArticleId IdType="pubmed">12872003</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2011 Sep 27;108(39):16463-8</Citation><ArticleIdList><ArticleId IdType="pubmed">21911370</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2008 Dec;118(1):15-27</Citation><ArticleIdList><ArticleId IdType="pubmed">18795251</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2004 Jul;109(2):342-51</Citation><ArticleIdList><ArticleId IdType="pubmed">15014880</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1994 May;137(1):67-77</Citation><ArticleIdList><ArticleId IdType="pubmed">7914505</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2013 Feb;126(2):349-58</Citation><ArticleIdList><ArticleId IdType="pubmed">23070028</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome. 2005 Aug;48(4):698-711</Citation><ArticleIdList><ArticleId IdType="pubmed">16094437</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 1991 Nov 1;88(21):9828-32</Citation><ArticleIdList><ArticleId IdType="pubmed">1682921</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2001 Jun 14;411(6839):826-33</Citation><ArticleIdList><ArticleId IdType="pubmed">11459065</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 1996 Sep;93(4):503-11</Citation><ArticleIdList><ArticleId IdType="pubmed">24162341</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2009 Jul 15;25(14):1754-60</Citation><ArticleIdList><ArticleId IdType="pubmed">19451168</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 2005 Jul;18(7):722-9</Citation><ArticleIdList><ArticleId IdType="pubmed">16042018</ArticleId></ArticleIdList></Reference><Reference><Citation>Phytopathology. 2006 Feb;96(2):120-9</Citation><ArticleIdList><ArticleId IdType="pubmed">18943914</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2005 Aug;111(3):591-7</Citation><ArticleIdList><ArticleId IdType="pubmed">15909136</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2003 May;106(8):1473-85</Citation><ArticleIdList><ArticleId IdType="pubmed">12750791</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 2004 Mar;166(3):1517-27</Citation><ArticleIdList><ArticleId IdType="pubmed">15082565</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Phytopathol. 2001;39:285-312</Citation><ArticleIdList><ArticleId IdType="pubmed">11701867</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2013;8(2):e56200</Citation><ArticleIdList><ArticleId IdType="pubmed">23409153</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2005 Feb;110(4):605-12</Citation><ArticleIdList><ArticleId IdType="pubmed">15657741</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 2009 Jun;22(6):630-41</Citation><ArticleIdList><ArticleId IdType="pubmed">19445588</ArticleId></ArticleIdList></Reference><Reference><Citation>Biotechniques. 1995 Nov;19(5):780-2, 784</Citation><ArticleIdList><ArticleId IdType="pubmed">8588916</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 2005 Apr;169(4):2277-93</Citation><ArticleIdList><ArticleId IdType="pubmed">15716503</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 2010 Jan;94(1):24-30</Citation><ArticleIdList><ArticleId IdType="pubmed">30754398</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Genet Genomics. 2001 Jun;265(4):694-704</Citation><ArticleIdList><ArticleId IdType="pubmed">11459190</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 1998 Nov;8(11):1113-30</Citation><ArticleIdList><ArticleId IdType="pubmed">9847076</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Plant Biol. 2010 Aug;13(4):472-7</Citation><ArticleIdList><ArticleId IdType="pubmed">20483655</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2005 Apr;42(2):251-61</Citation><ArticleIdList><ArticleId IdType="pubmed">15807786</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Corée du Sud</li></country><region><li>Région capitale de Séoul</li></region><settlement><li>Séoul</li></settlement><orgName><li>Université nationale de Séoul</li></orgName></list><tree><noCountry><name sortKey="Choi, Doil" sort="Choi, Doil" uniqKey="Choi D" first="Doil" last="Choi">Doil Choi</name><name sortKey="Choi, Gyung Ja" sort="Choi, Gyung Ja" uniqKey="Choi G" first="Gyung Ja" last="Choi">Gyung Ja Choi</name><name sortKey="Choi, Hye Jeong" sort="Choi, Hye Jeong" uniqKey="Choi H" first="Hye-Jeong" last="Choi">Hye-Jeong Choi</name><name sortKey="Jahn, Molly" sort="Jahn, Molly" uniqKey="Jahn M" first="Molly" last="Jahn">Molly Jahn</name><name sortKey="Jeong, Hyeon Seok" sort="Jeong, Hyeon Seok" uniqKey="Jeong H" first="Hyeon-Seok" last="Jeong">Hyeon-Seok Jeong</name><name sortKey="Kang, Byoung Cheorl" sort="Kang, Byoung Cheorl" uniqKey="Kang B" first="Byoung-Cheorl" last="Kang">Byoung-Cheorl Kang</name><name sortKey="Kang, Jin Ho" sort="Kang, Jin Ho" uniqKey="Kang J" first="Jin-Ho" last="Kang">Jin-Ho Kang</name><name sortKey="Kim, Ki Taek" sort="Kim, Ki Taek" uniqKey="Kim K" first="Ki-Taek" last="Kim">Ki-Taek Kim</name><name sortKey="Yang, Hee Bum" sort="Yang, Hee Bum" uniqKey="Yang H" first="Hee-Bum" last="Yang">Hee-Bum Yang</name></noCountry><country name="Corée du Sud"><region name="Région capitale de Séoul"><name sortKey="Liu, Wing Yee" sort="Liu, Wing Yee" uniqKey="Liu W" first="Wing-Yee" last="Liu">Wing-Yee Liu</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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